diff --git a/builtin/clone.c b/builtin/clone.c
index cd43bb5aa2..697c5bb5cb 100644
--- a/builtin/clone.c
+++ b/builtin/clone.c
@@ -1225,12 +1225,7 @@ int cmd_clone(int argc,
 	initialize_repository_version(GIT_HASH_UNKNOWN,
 				      the_repository->ref_storage_format, 1);
 
-	strbuf_addf(&buf, "%s/HEAD", git_dir);
-	write_file(buf.buf, "ref: refs/heads/.invalid");
-
-	strbuf_reset(&buf);
-	strbuf_addf(&buf, "%s/refs", git_dir);
-	safe_create_dir(the_repository, buf.buf, 1);
+	refs_create_refdir_stubs(the_repository, git_dir, NULL);
 
 	/*
 	 * additional config can be injected with -c, make sure it's included
diff --git a/refs.c b/refs.c
index 627b7f8698..77b93d655b 100644
--- a/refs.c
+++ b/refs.c
@@ -2163,6 +2163,29 @@ const char *refs_resolve_ref_unsafe(struct ref_store *refs,
 	return NULL;
 }
 
+void refs_create_refdir_stubs(struct repository *repo, const char *refdir,
+			      const char *refs_heads_content)
+{
+	struct strbuf path = STRBUF_INIT;
+
+	strbuf_addf(&path, "%s/HEAD", refdir);
+	write_file(path.buf, "ref: refs/heads/.invalid");
+	adjust_shared_perm(repo, path.buf);
+
+	strbuf_reset(&path);
+	strbuf_addf(&path, "%s/refs", refdir);
+	safe_create_dir(repo, path.buf, 1);
+
+	if (refs_heads_content) {
+		strbuf_reset(&path);
+		strbuf_addf(&path, "%s/refs/heads", refdir);
+		write_file(path.buf, "%s", refs_heads_content);
+		adjust_shared_perm(repo, path.buf);
+	}
+
+	strbuf_release(&path);
+}
+
 /* backend functions */
 int ref_store_create_on_disk(struct ref_store *refs, int flags, struct strbuf *err)
 {
diff --git a/refs.h b/refs.h
index f0abfa1d93..a35fdc6642 100644
--- a/refs.h
+++ b/refs.h
@@ -1427,4 +1427,17 @@ void ref_iterator_free(struct ref_iterator *ref_iterator);
 int do_for_each_ref_iterator(struct ref_iterator *iter,
 			     each_ref_fn fn, void *cb_data);
 
+/*
+ * Git only recognizes a directory as a repository if it contains:
+ * - HEAD file
+ * - refs/ folder
+ * While it is necessary within the files backend, newer backends may not
+ * follow the same structure. To go around this, we create stubs as necessary.
+ *
+ * If provided with a 'refs_heads_content', we create the 'refs/heads/head' file
+ * with the provided message.
+ */
+void refs_create_refdir_stubs(struct repository *repo, const char *refdir,
+			      const char *refs_heads_content);
+
 #endif /* REFS_H */
diff --git a/refs/reftable-backend.c b/refs/reftable-backend.c
index fe74af73af..d8651fe779 100644
--- a/refs/reftable-backend.c
+++ b/refs/reftable-backend.c
@@ -491,18 +491,8 @@ static int reftable_be_create_on_disk(struct ref_store *ref_store,
 	safe_create_dir(the_repository, sb.buf, 1);
 	strbuf_reset(&sb);
 
-	strbuf_addf(&sb, "%s/HEAD", refs->base.gitdir);
-	write_file(sb.buf, "ref: refs/heads/.invalid");
-	adjust_shared_perm(the_repository, sb.buf);
-	strbuf_reset(&sb);
-
-	strbuf_addf(&sb, "%s/refs", refs->base.gitdir);
-	safe_create_dir(the_repository, sb.buf, 1);
-	strbuf_reset(&sb);
-
-	strbuf_addf(&sb, "%s/refs/heads", refs->base.gitdir);
-	write_file(sb.buf, "this repository uses the reftable format");
-	adjust_shared_perm(the_repository, sb.buf);
+	refs_create_refdir_stubs(the_repository, refs->base.gitdir,
+				 "this repository uses the reftable format");
 
 	strbuf_release(&sb);
 	return 0;