The find_longest_common_sequence() function in patience diff is
inefficient as it calls binary_search() for every unique line it
encounters when deciding where to put it in the sequence. From
instrumentation (using xctrace) on popular repositories, binary_search()
takes up 50-60% of the run time within patience_diff() when performing a
diff.
To optimize this, add a boundary condition check before binary_search()
is called to see if the encountered unique line is located after the
entire currently tracked longest subsequence. If so, skip the
unnecessary binary search and simply append the entry to the end of
sequence. Given that most files compared in a diff are usually quite
similar to each other, this condition is very common, and should be hit
much more frequently than the binary search.
Below are some end-to-end performance results by timing `git log
--shortstat --oneline -500 --patience` on different repositories with
the old and new code. Generally speaking this seems to give at least
8-10% speed up. The "binary search hit %" column describes how often the
algorithm enters the binary search path instead of the new faster path.
Even in the WebKit case we can see that it's quite rare (1.46%).
| Repo | Speed difference | binary search hit % |
|----------|------------------|---------------------|
| vim | 1.27x | 0.01% |
| pytorch | 1.16x | 0.02% |
| cpython | 1.14x | 0.06% |
| ripgrep | 1.14x | 0.03% |
| git | 1.13x | 0.12% |
| vscode | 1.09x | 0.10% |
| WebKit | 1.08x | 1.46% |
The benchmarks were done using hyperfine, on an Apple M1 Max laptop,
with git compiled with `-O3 -flto`.
Signed-off-by: Yee Cheng Chin <ychin.git@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
size_t is used because nrec describes the number of elements for both
recs, and for 'changed' + 2.
Signed-off-by: Ezekiel Newren <ezekielnewren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The ha field is serving two different purposes, which makes the code
harder to read. At first glance, it looks like many places assume
there could never be hash collisions between lines of the two input
files. In reality, line_hash is used together with xdl_recmatch() to
ensure correct comparisons of lines, even when collisions occur.
To make this clearer, the old ha field has been split:
* line_hash: a straightforward hash of a line, independent of any
external context. Its type is uint64_t, as it comes from a fixed
width hash function.
* minimal_perfect_hash: Not a new concept, but now a separate
field. It comes from the classifier's general-purpose hash table,
which assigns each line a unique and minimal hash across the two
files. A size_t is used here because it's meant to be used to
index an array. This also avoids ` as usize` casts on the Rust
side when using it to index a slice.
Signed-off-by: Ezekiel Newren <ezekielnewren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Make xrecord_t.ptr uint8_t because it's referring to bytes in memory.
In order to avoid a refactor avalanche, many uses of this field were
cast to char* or similar.
Places where casting was unnecessary:
xemit.c:156
xmerge.c:124
xmerge.c:127
xmerge.c:164
xmerge.c:169
xmerge.c:172
xmerge.c:178
Signed-off-by: Ezekiel Newren <ezekielnewren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The only values possible for 'changed' is 1 and 0, which exactly maps
to a bool type. It might not look like this because action1 and action2
(which use to be dis1, and dis2) were also of type char and were
assigned numerical values within a few lines of 'changed' (what used to
be rchg).
Using DISCARD/KEEP/INVESTIGATE for action1[i]/action2[j], and true/false
for changed[k] makes it clear to future readers that these are
logically separate concepts.
Best-viewed-with: --color-words
Signed-off-by: Ezekiel Newren <ezekielnewren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The field rchg (now 'changed') declares if a line in a file is changed
or not. A later commit will change it's type from 'char' to 'bool'
to make its purpose even more clear.
Best-viewed-with: --color-words
Signed-off-by: Ezekiel Newren <ezekielnewren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
xdfile_t currently uses chastore_t which is an arena allocator. I
think that xrecord_t used to be a linked list and recs didn't exist
originally. When recs was added I think they forgot to remove
xdfile_t.next, but was overlooked. This dual data structure setup
makes the code somewhat confusing.
Additionally the C type chastore_t isn't FFI friendly, and provides
little to no performance benefit over using realloc to grow an array.
Performance impact of deleting fields from xdfile_t:
Deleting ha is about 5% slower.
Deleting cha is about 5% faster.
Delete ha, but keep cha
time hyperfine --warmup 3 -L exe build_v2.51.0/git,build_delete_ha/git '{exe} log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null'
Benchmark 1: build_v2.51.0/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Time (mean ± σ): 1.269 s ± 0.017 s [User: 1.135 s, System: 0.128 s]
Range (min … max): 1.249 s … 1.286 s 10 runs
Benchmark 2: build_delete_ha/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Time (mean ± σ): 1.339 s ± 0.017 s [User: 1.234 s, System: 0.099 s]
Range (min … max): 1.320 s … 1.358 s 10 runs
Summary
build_v2.51.0/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null ran
1.06 ± 0.02 times faster than build_delete_ha/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Delete cha, but keep ha
time hyperfine --warmup 3 -L exe build_v2.51.0/git,build_delete_chastore/git '{exe} log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null'
Benchmark 1: build_v2.51.0/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Time (mean ± σ): 1.290 s ± 0.001 s [User: 1.154 s, System: 0.130 s]
Range (min … max): 1.288 s … 1.292 s 10 runs
Benchmark 2: build_delete_chastore/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Time (mean ± σ): 1.232 s ± 0.017 s [User: 1.105 s, System: 0.121 s]
Range (min … max): 1.205 s … 1.249 s 10 runs
Summary
build_delete_chastore/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null ran
1.05 ± 0.01 times faster than build_v2.51.0/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Delete ha AND chastore
time hyperfine --warmup 3 -L exe build_v2.51.0/git,build_delete_ha_and_chastore/git '{exe} log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null'
Benchmark 1: build_v2.51.0/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Time (mean ± σ): 1.291 s ± 0.002 s [User: 1.156 s, System: 0.129 s]
Range (min … max): 1.287 s … 1.295 s 10 runs
Benchmark 2: build_delete_ha_and_chastore/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Time (mean ± σ): 1.306 s ± 0.001 s [User: 1.195 s, System: 0.105 s]
Range (min … max): 1.305 s … 1.308 s 10 runs
Summary
build_v2.51.0/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null ran
1.01 ± 0.00 times faster than build_delete_ha_and_chastore/git log --oneline --shortstat --diff-algorithm=myers -3000 v2.39.1 >/dev/null
Best-viewed-with: --color-words
Signed-off-by: Ezekiel Newren <ezekielnewren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The loop iteration variable is non-negative and used in comparisons
against a size_t value. Use size_t to eliminate the mismatch.
Signed-off-by: David Aguilar <davvid@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Allow each file to fix the warnings guarded by the macro separately by
moving the definition from the shared xinclude.h into each file that
needs it.
xmerge.c and xprepare.c do not contain any signed vs. unsigned
comparisons so the definition was not included in these files.
Signed-off-by: David Aguilar <davvid@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The entry point to the patience-diff algorithm takes two mmfile_t
structs with the original file contents, but it doesn't actually do
anything useful with them. This is similar to the case recently cleaned
up in the histogram code via f1d019071e (xdiff: drop unused mmfile
parameters from xdl_do_histogram_diff(), 2022-08-19), but there's a bit
more subtlety going on.
We pass them into the recursive patience_diff(), which in turn passes
them into fill_hashmap(), which stuffs the pointers into a struct. But
the only thing which reads the struct fields is our recursion into
patience_diff()!
So it's unlikely that something like -Wunused-parameter could find this
case: it would have to detect the circular dependency caused by the
recursion (not to mention tracing across struct field assignments).
But once found, it's easy to have the compiler confirm what's going on:
1. Drop the "file1" and "file2" fields from the hashmap struct
definition. Remove the assignments in fill_hashmap(), and
temporarily substitute NULL in the recursive call to
patience_diff(). Compiling shows that no other code touched those
fields.
2. Now fill_hashmap() will trigger -Wunused-parameter. Drop "file1"
and "file2" from its definition and callsite.
3. Now patience_diff() will trigger -Wunused-parameter. Drop them
there, too. One of the callsites is the recursion with our
NULL values, so those temporary values go away.
4. Now xdl_do_patience_diff() will trigger -Wunused-parameter. Drop
them there. And we're done.
Suggested-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a helper for allocating an array and initialize the elements to
zero. This is analogous to CALLOC_ARRAY() in the rest of the codebase
but it returns NULL on allocation failures rather than dying to
accommodate other users of libxdiff such as libgit2.
Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In preparation for introducing XDL_CALLOC_ARRAY() use calloc() to
obtain zeroed out memory rather than malloc() followed by memset(). To
try and keep the lines a reasonable length this commit also stops
casting the pointer returned by calloc() as this is unnecessary.
Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Add a helper to allocate an array that automatically calculates the
allocation size. This is analogous to ALLOC_ARRAY() in the rest of the
codebase but returns NULL if the allocation fails to accommodate other
users of libxdiff such as libgit2. The helper will also return NULL if
the multiplication in the allocation calculation overflows.
Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Other users of libxdiff such as libgit2 need to be able to handle
allocation failures. As NULL is a valid return value the function
signature is changed to be able report allocation failures.
Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Although the patience and histogram algorithms initialize the
environment they do not free it if there is an error. In contrast for
the Myers algorithm the environment is initalized in xdl_do_diff() and
it is freed if there is an error. Fix this by always initializing the
environment in xdl_do_diff() and freeing it there if there is an
error. Remove the comment in do_patience_diff() about the environment
being freed by xdl_diff() as it is not accurate because (a) xdl_diff()
does not do that if there is an error and (b) xdl_diff() is not the
only caller.
Reported-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
xdl_prepare_env() calls xdl_classify_record() which arranges for the
hashes of non-matching lines to be different so lines can be tested
for equality by comparing just their hashes.
This reduces the time taken to calculate the diff of v2.28.0 to
v2.29.0 by ~3-4%.
Signed-off-by: Phillip Wood <phillip.wood@dunelm.org.uk>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
xpparam_t structures are usually zero-initialized before their specific
fields are assigned to, but there are three locations in the tree where
that does not happen. Add the missing memset() calls in order to make
initialization of xpparam_t structures consistent tree-wide and to
prevent stack garbage from being used as field values.
Signed-off-by: Michał Kępień <michal@isc.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
92b7de93fb (Implement the patience diff algorithm, 2009-01-07) added them
but were already part of xinclude.h
Signed-off-by: Carlo Marcelo Arenas Belón <carenas@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Teach diff a new algorithm, one that attempts to prevent user-specified
lines from appearing as a deletion or addition in the end result. The
end user can use this by specifying "--anchored=<text>" one or more
times when using Git commands like "diff" and "show".
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The mailing address for the FSF has changed over the years. Rather than
updating the address across all files, refer readers to gnu.org, as the
GNU GPL documentation now suggests for license notices. The mailing
address is retained in the full license files (COPYING and LGPL-2.1).
The old address is still present in t/diff-lib/COPYING. This is
intentional, as the file is used in tests and the contents are not
expected to change.
Signed-off-by: Todd Zullinger <tmz@pobox.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
A common mistake when writing binary search is to allow possible
integer overflow by using the simple average:
mid = (min + max) / 2;
Instead, use the overflow-safe version:
mid = min + (max - min) / 2;
This translation is safe since the operation occurs inside a loop
conditioned on "min < max". The included changes were found using
the following git grep:
git grep '/ *2;' '*.c'
Making this cleanup will prevent future review friction when a new
binary search is contructed based on existing code.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Reviewed-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
When comparing two lines, ignoring any whitespace at the end, we first
try to match as many bytes as possible and break out of the loop only
upon mismatch, to let the remainder be handled by the code shared with
the other whitespace-ignoring code paths.
When comparing the bytes, however, we incremented the counters always,
even if the bytes did not match. And because we fall through to the
space-at-eol handling at that point, it is as if that mismatch never
happened.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Because the default Myers, patience and histogram algorithms cannot be in
effect at the same time, XDL_PATIENCE_DIFF and XDL_HISTOGRAM_DIFF are not
independent bits. Instead of wasting one bit per algorithm, define a few
macros to access the few bits they occupy and update the code that access
them.
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This is in preparation for the histogram diff algorithm, which will also
re-use much of the code to call the default Meyers diff algorithm.
Signed-off-by: Tay Ray Chuan <rctay89@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The patience diff algorithm produces slightly more intuitive output
than the classic Myers algorithm, as it does not try to minimize the
number of +/- lines first, but tries to preserve the lines that are
unique.
To this end, it first determines lines that are unique in both files,
then the maximal sequence which preserves the order (relative to both
files) is extracted.
Starting from this initial set of common lines, the rest of the lines
is handled recursively, with Myers' algorithm as a fallback when
the patience algorithm fails (due to no common unique lines).
This patch includes memory leak fixes by Pierre Habouzit.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
